MmuEX6100904 @ mm9
Exon Skipping
Gene
ENSMUSG00000075376 | Rc3h2
Description
ring finger and CCCH-type zinc finger domains 2 [Source:MGI Symbol;Acc:MGI:2442789]
Coordinates
chr2:37234378-37238736:-
Coord C1 exon
chr2:37238303-37238736
Coord A exon
chr2:37237390-37237557
Coord C2 exon
chr2:37234378-37234524
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTATTCCTCTTAGGAA
3' ss Score
10.32
5' ss Seq
GATGTAAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GATACTACCCACCACCTCCAACGGTACCAGCTGGTGTGACTCCCTGTGTTCCTCGCTTTGTGAGGTCCAGTAATGTTCCAGAGTCCTCCCTCCCACCTGCTTCCATGCCATATGCTGATCATTACAGTACATTCTCCCCTCGAGATCGAATGAATTCTTCTCCTTACCAACCTCCTCCTCCGCAGCAGTATGGACCAGTTCCTCCAGTACCCTCTGGAATGTATGCTCCGGTGTATGACAGCAGGCGCATCTGGCGCCCAGCTATGTACCAACGAGATGACATTATTAGAAGCAATTCTTTACCTCCAATGGATGTGATGCACTCATCTGTCTATCAGACATCTTTACGGGAAAGATACAACTCATTAGATGGATATTATTCAGTGGCTTGTCAGCCACCGAATGACCCAAGGACAACTGTGCCTTTACCAAGG
Seq A exon
GAACCTTGTGGTCATTTGAAGACCAGTTGTGAGGAACAGTTAAGAAGAAAGCCAGATCAGTGGACACAGTATCATACCCAGAAAACACCTGTCTCTTCAACTCTTCCTGTGGCCACACAGTCACCAACACCACCTTCTCCTCTATTCAGTGTAGACTTCCGATCGGAT
Seq C2 exon
TTCTCTGAGAGTGTGAGTGGCGCAAAATTTGAGGAAGACCATCTTTCCCATTATTCTCCCTGGTCTTGTGGTACCATAGGCTCTTGTATAAATGCCATTGATTCGGAGCCCAAAGACGTAATTGCTAATTCAAATGCTGTATTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075376-'18-21,'18-18,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.690 A=0.857 C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCTATGTACCAACGAG
R:
TGGTACCACAAGACCAGGGAG
Band lengths:
255-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: