DreEX6087233 @ danRer10
Exon Skipping
Gene
ENSDARG00000063050 | rc3h2
Description
ring finger and CCCH-type domains 2 [Source:ZFIN;Acc:ZDB-GENE-060503-694]
Coordinates
chr10:9795420-9799694:+
Coord C1 exon
chr10:9795420-9795781
Coord A exon
chr10:9798675-9798797
Coord C2 exon
chr10:9799542-9799694
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTGTCTATTTTACAGGAC
3' ss Score
10.86
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TTCCTCCGAAGTCATGCAGTCCTCGCTTCCATCGTTCCAGCAATGTGCCCGAGTCCATGTTACCCCCTTCAGTGGGTCCTGTGTATCCTGATCAGCACCCCTCTGTTCCTGCTTTAGACAGACTAGGCCCAAGTCATTTTGGGCCGCCCTCTGCCTACTCCTCTCATGGCATGTACACCCCTGTTTACGACAGCCGGCGCGTGTGGAGGCCACCGCTGTATCCCAGGGATGGAGGAAGGAGTAACTCTCTCCCTCTAGAGGTTTTTCGATCCACTGTTTATCAGCCACCGCTCCGGGAGCGATACAACTCTCTAGACAGTCCATACTGCAGCACGACGGAGCAGAGAGCCACTATGCACAGG
Seq A exon
GACGCATACACTCGTGTTGATGAACTCTATCGACACAAACAGGAACACTGGGTACATCACCACAGCAATGTGAACCGGGCATCCCAGTCATCCCCAGTCTTCACTGTGGACATGTGTCCAGAG
Seq C2 exon
CATCCCGAGGGTGTAGGTGGTGGGCGTATGACTTGCAAGTGTCATGGTGGAGAAGAGAGTCTTGCCCACTACTCGCCCTGGTCGTGCAGCACCATCAGCCCATTTGAGTCAGAGCCCCATCATTTGCCAACCCACTCCTGTTCCAAACATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063050-'17-16,'17-15,20-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=0.439 C2=0.304
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCTACTCCTCTCATGGC
R:
AAGTCATACGCCCACCACCTA
Band lengths:
247-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]