GgaEX0001387 @ galGal3
Exon Skipping
Gene
ENSGALG00000001253 | RC3H2
Description
NA
Coordinates
chr17:9497648-9499923:-
Coord C1 exon
chr17:9499496-9499923
Coord A exon
chr17:9498907-9499077
Coord C2 exon
chr17:9497648-9497803
Length
171 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTTTGTTATTGCTAGGAG
3' ss Score
7.4
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
GATACTATCCACCACCTCCAACAGTACCAGCTGGCGTGGCTCCTTGTGTTCCTCGCTTTGTGAGGTCCAATAATGTTCCAGAATCCTCCCTCCCACCTGCTTCCGTGCCATATGCCGATCATTACAGTACGTTTCCACCTCGAGATCGACTGAATTCTCCTTACCAACCTCCTCCTCCGCAGCCGTATGGACCAGTTCCTCCTGTCCCTTCTGGAATGTATGCTCCAGTTTATGACAGCAGGCGCATCTGGCGCCCACAGATGTACCCACGGGATGATATTATTAGGAGCAATTCTTTACCTCCCATGGATGTGATGCACTCATCTGTCTATCAGACATCATTACGTGAGAGATACAACTCTTTGGATGGGTATTACTCTGTGGCTTGTCAACCTCCAAATGAACAGAGGACTGTGCCTTTACCAAGG
Seq A exon
GAGCCTTGTGGTCACTTGAAGACTGGGTATGATGAACAATTACGACGGAAGCCAGAACAGTGGGCACAATATCACACACAGAAAACTCCTCTTGTATCATCAACCCTTCCTATGGCAACACCATCTCCAACACCACCTTCTCCTCTCTTCAGTGTAGATTTCAACACAGAG
Seq C2 exon
TTCTCTGAGAGTGTCAATGATTTGAGTGGAACTAAATTTGAGGAAGATCATCTCTCTCACTATTCACCATGGTCTTGTGGCACTATTGGCTCTTGTATAAATGCTATCGACTCAGAGCCCAAGGATGTGATTGCCAATTCAAATGCCGTGTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001253_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.657 A=0.860 C2=0.173
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCATGGATGTGATGCAC
R:
TTGGGCTCTGAGTCGATAGCA
Band lengths:
251-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]