RnoEX6016639 @ rn6
Exon Skipping
Gene
ENSRNOG00000009196 | Rc3h2
Description
ring finger and CCCH-type domains 2 [Source:RGD Symbol;Acc:1304833]
Coordinates
chr3:21630730-21635423:-
Coord C1 exon
chr3:21634990-21635423
Coord A exon
chr3:21633922-21634089
Coord C2 exon
chr3:21630730-21630876
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTATTCCTCTTAGGAA
3' ss Score
10.32
5' ss Seq
GATGTAAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GATACTACCCACCACCTCCAACGGTACCAGCTGGTGTGACTCCCTGTGTTCCTCGCTTTGTGAGGTCCAATAATGTTCCAGAGTCCTCCCTCCCACCTGCTTCCATGCCATATGCTGATCATTACAGTACATTTTCCCCTCGAGATCGAATGAATTCTTCTCCTTACCAACCTCCTCCTCCGCAGCAGTATGGACCAGTTCCTCCAGTACCCTCTGGGATGTATGCTCCTGTGTATGACAGCAGGCGCATCTGGCGCCCAGCTATGTACCAGCGAGATGACATTATTAGAAGCAATTCTTTACCTCCAATGGATGTGATGCACTCATCTGTCTATCAGACATCTTTACGGGAAAGATACAACTCATTAGATGGTTATTATTCAGTGACTTGTCAGCCACCAAATGACCCAAGGACAACTGTGCCTTTACCAAGG
Seq A exon
GAACCTTGTGGTCATTTAAAAAGCAGTTGTGAGGAACAGTTAAGAAGAAAGCCAGATCAGTGGACACAGTATCATACCCAGAAGACACCTGTCTCTTCAACTCTTCCTGTGGCAACACAGTCACCAACACCACCTTCTCCTTTGTTCAGTGTAGACTTCAGATCGGAT
Seq C2 exon
TTCTCTGAGAGTGGGAGTGGCACAAAATTTGAGGAAGACCATCTTTCCCATTATTCTCCTTGGTCTTGTGGCACTATAGGCTCTTGTATAAATGCCATTGATTCAGAGCCCAAAGATGTAATTGCCAATTCAAATGCTGTGCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009196-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=0.893 C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCTATGTACCAGCGAGA
R:
AGTGCCACAAGACCAAGGAGA
Band lengths:
253-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]