GgaEX0001387 @ galGal4
Exon Skipping
Gene
ENSGALG00000001253 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr17:8788602-8790877:-
Coord C1 exon
chr17:8790450-8790877
Coord A exon
chr17:8789861-8790031
Coord C2 exon
chr17:8788602-8788757
Length
171 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTTTGTTATTGCTAGGAG
3' ss Score
7.4
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
GATACTATCCACCACCTCCAACAGTACCAGCTGGCGTGGCTCCTTGTGTTCCTCGCTTTGTGAGGTCCAATAATGTTCCAGAATCCTCCCTCCCACCTGCTTCCGTGCCATATGCCGATCATTACAGTACGTTTCCACCTCGAGATCGACTGAATTCTCCTTACCAACCTCCTCCTCCGCAGCCGTATGGACCAGTTCCTCCTGTCCCTTCTGGAATGTATGCTCCAGTTTATGACAGCAGGCGCATCTGGCGCCCACAGATGTACCCACGGGATGATATTATTAGGAGCAATTCTTTACCTCCCATGGATGTGATGCACTCATCTGTCTATCAGACATCATTACGTGAGAGATACAACTCTTTGGATGGGTATTACTCTGTGGCTTGTCAACCTCCAAATGAACAGAGGACTGTGCCTTTACCAAGG
Seq A exon
GAGCCTTGTGGTCACTTGAAGACTGGGTATGATGAACAATTACGACGGAAGCCAGAACAGTGGGCACAATATCACACACAGAAAACTCCTCTTGTATCATCAACCCTTCCTATGGCAACACCATCTCCAACACCACCTTCTCCTCTCTTCAGTGTAGATTTCAACACAGAG
Seq C2 exon
TTCTCTGAGAGTGTCAATGATTTGAGTGGAACTAAATTTGAGGAAGATCATCTCTCTCACTATTCACCATGGTCTTGTGGCACTATTGGCTCTTGTATAAATGCTATCGACTCAGAGCCCAAGGATGTGATTGCCAATTCAAATGCCGTGTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001253_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.657 A=0.860 C2=0.173
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCATGGATGTGATGCAC
R:
TTGGGCTCTGAGTCGATAGCA
Band lengths:
251-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]