HsaEX0052839 @ hg19
Exon Skipping
Gene
ENSG00000056586 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:21461]
Coordinates
chr9:125618011-125621381:-
Coord C1 exon
chr9:125620948-125621381
Coord A exon
chr9:125620202-125620372
Coord C2 exon
chr9:125618011-125618157
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTATCCCCCATTAGGAA
3' ss Score
8.77
5' ss Seq
GATGTAAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GATACTATCCACCACCTCCAACGGTACCAGCTGGTGTGGCTCCCTGTGTTCCTCGCTTTGTGAGGTCCAATAACGTTCCAGAGTCCTCCCTCCCACCTGCTTCCATGCCATATGCCGATCATTACAGTACATTTTCCCCTCGAGATCGAATGAATTCTTCTCCTTACCAGCCTCCTCCTCCGCAGCCGTATGGACCAGTTCCTCCAGTACCTTCTGGAATGTATGCTCCTGTGTACGACAGCAGGCGCATCTGGCGCCCACCTATGTACCAACGAGATGACATTATTAGAAGCAATTCTTTACCTCCAATGGATGTGATGCACTCATCTGTCTATCAGACATCTTTGCGGGAAAGATATAACTCATTAGATGGATATTATTCGGTGGCTTGTCAGCCACCAAGTGAGCCAAGGACAACTGTGCCTTTACCAAGG
Seq A exon
GAACCTTGTGGTCATTTGAAGACCAGTTGCGAGGAGCAGATAAGAAGAAAGCCAGATCAGTGGGCACAGTACCACACTCAGAAAGCACCTCTTGTCTCTTCAACTCTTCCTGTGGCAACACAGTCACCAACACCACCTTCTCCTCTGTTCAGTGTAGACTTTCGTGCGGAT
Seq C2 exon
TTCTCAGAGAGTGTGAGTGGTACAAAATTTGAAGAAGATCATCTTTCCCATTATTCTCCCTGGTCTTGTGGCACCATAGGCTCCTGTATAAATGCCATTGATTCAGAGCCCAAAGATGTCATTGCTAATTCAAATGCTGTGTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056586_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=0.596 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACCTATGTACCAACGAG
R:
CTATGGTGCCACAAGACCAGG
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)