BtaEX0030273 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016827 | RGL2
Description
Bos taurus ral guanine nucleotide dissociation stimulator-like 2 (RGL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075154]
Coordinates
chr23:7411668-7412487:-
Coord C1 exon
chr23:7412190-7412487
Coord A exon
chr23:7411800-7411919
Coord C2 exon
chr23:7411668-7411706
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTCTTACCTCTGCCCTGCAGGAG
3' ss Score
9.43
5' ss Seq
AAGGTGGCA
5' ss Score
1.02
Exon sequences
Seq C1 exon
GGTAGCCATCTCTGTACTGTCAACCTGGCTGGCCTCTCACCCTGAGGATTTTGGCTCTGAGGTCAAGGGTCAGCTTGACCGGCTTGAGAGCTTCTTTCTTCGGACAGGGTATGCAGCAGGGGAGGGTATTGTGGGGGGCGGCGCTGACCTCATCCGCAACCTCCGGTCCCGGGTGGACCCCCAGACCCCCGAACTTCCTAAGCCCTTGGCCCTCCCCGGCGATCCCCCTGCTGACCCCACGGATGTCCTGGTGTACCTCGCTGACCACTTGGCCGAACAGCTGACCCTGCTAGATGCG
Seq A exon
GAGCTGTTTCTCAATCTGGTCCCCTCTCAGTGCCTGGGGGGCCTGTGGGGTCACAGAGACCGGCCAGGACATTCTCACCTCTGCCCATCTGTCCGGGCGACTGTCACACAGTTCAACAAG
Seq C2 exon
AGGGCCCGGCTCTTGGAGAAGTGGATCCGCGTGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016827_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=0.083 C2=0.083
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(31.6=31.0),PF0061714=RasGEF=PU(7.2=16.0)
A:
PF0061714=RasGEF=FE(37.2=100)
C2:
PF0061714=RasGEF=FE(37.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTGACCGGCTTGAGAG
R:
GATCCACTTCTCCAAGAGCCG
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development