MmuEX6076930 @ mm10
Exon Skipping
Gene
ENSMUSG00000041354 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:MGI Symbol;Acc:MGI:107483]
Coordinates
chr17:33932454-33933454:+
Coord C1 exon
chr17:33932454-33932751
Coord A exon
chr17:33933009-33933260
Coord C2 exon
chr17:33933351-33933454
Length
252 bp
Sequences
Splice sites
3' ss Seq
TTGTAACCTCTGCCCTGCAGGAA
3' ss Score
8.68
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGTAGCCATCTCTGTACTTTCAACTTGGCTGGCCTCTCACCCTGAGGATTTTGGCTCTGAGGTCAAGGGTCAACTTGACCGGCTTGAGAGCTTCTTGCTTCGGACAGGGTATGCAGCACGGGAGGGTGTTGTGGGGGGCAGTGCTGACCTCATCCGAAACCTCCGGGCCCGGGTGGACCCCCGGGCCCCCGACCTTCCTAAGCCCCTGGCCCTTCCTGGCGATTCCCCTGCTGACCCCACGGATGTCCTGGTGTTCCTCGCTGACCACTTGGCCGAACAGCTGACCCTGCTAGATGCG
Seq A exon
GAACTGTTTCTTAATCTGATCCCCTCTCAGTGTTTGGGAGGCCTCTGGGGTCACAGAGACCGGCCAGGACATTCTCACCTCTGCCCGTCTGTCCGAGCTACCGTCACACAGTTCAACAAGGTGGCGGGGGCGGTAGTTAGCTCTGTCTTGGGGGCCACCTCAATTGGAGAGGGGCCAAGAGAGGTGACTGTGAGACCACTGCGGCCCCCACAGAGGGCCCGGCTCCTAGAGAAGTGGATCCGTGTGGCCGAG
Seq C2 exon
GAGTGCCGCCTGCTTCGGAACTTCTCCTCAGTGTATGCTGTTGTGTCCGCTCTGCAGTCCAGCCCTATCCACAGGCTTCGGGCAGCCTGGGGGGAGACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041354-'16-20,'16-16,23-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.119 C2=0.000
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(31.6=31.0),PF0061714=RasGEF=PU(7.2=16.0)
A:
PF0061714=RasGEF=FE(37.2=100)
C2:
PF0061714=RasGEF=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGCTCTGAGGTCAAGGGT
R:
GAGCGGACACAACAGCATACA
Band lengths:
301-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types