MmuEX6076930 @ mm9
Exon Skipping
Gene
ENSMUSG00000041354 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:MGI Symbol;Acc:MGI:107483]
Coordinates
chr17:34069399-34070399:+
Coord C1 exon
chr17:34069399-34069696
Coord A exon
chr17:34069954-34070205
Coord C2 exon
chr17:34070296-34070399
Length
252 bp
Sequences
Splice sites
3' ss Seq
TTGTAACCTCTGCCCTGCAGGAA
3' ss Score
8.68
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGTAGCCATCTCTGTACTTTCAACTTGGCTGGCCTCTCACCCTGAGGATTTTGGCTCTGAGGTCAAGGGTCAACTTGACCGGCTTGAGAGCTTCTTGCTTCGGACAGGGTATGCAGCACGGGAGGGTGTTGTGGGGGGCAGTGCTGACCTCATCCGAAACCTCCGGGCCCGGGTGGACCCCCGGGCCCCCGACCTTCCTAAGCCCCTGGCCCTTCCTGGCGATTCCCCTGCTGACCCCACGGATGTCCTGGTGTTCCTCGCTGACCACTTGGCCGAACAGCTGACCCTGCTAGATGCG
Seq A exon
GAACTGTTTCTTAATCTGATCCCCTCTCAGTGTTTGGGAGGCCTCTGGGGTCACAGAGACCGGCCAGGACATTCTCACCTCTGCCCGTCTGTCCGAGCTACCGTCACACAGTTCAACAAGGTGGCGGGGGCGGTAGTTAGCTCTGTCTTGGGGGCCACCTCAATTGGAGAGGGGCCAAGAGAGGTGACTGTGAGACCACTGCGGCCCCCACAGAGGGCCCGGCTCCTAGAGAAGTGGATCCGTGTGGCCGAG
Seq C2 exon
GAGTGCCGCCTGCTTCGGAACTTCTCCTCAGTGTATGCTGTTGTGTCCGCTCTGCAGTCCAGCCCTATCCACAGGCTTCGGGCAGCCTGGGGGGAGACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041354-'14-9,'14-8,15-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.119 C2=0.000
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(31.6=31.0),PF0061714=RasGEF=PU(7.2=16.0)
A:
PF0061714=RasGEF=FE(37.2=100)
C2:
PF0061714=RasGEF=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGCTCTGAGGTCAAGGGT
R:
GAGCGGACACAACAGCATACA
Band lengths:
301-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: