HsaEX6046618 @ hg38
Exon Skipping
Gene
ENSG00000237441 | RGL2
Description
ral guanine nucleotide dissociation stimulator like 2 [Source:HGNC Symbol;Acc:HGNC:9769]
Coordinates
chr6:33295508-33296325:-
Coord C1 exon
chr6:33296028-33296325
Coord A exon
chr6:33295640-33295759
Coord C2 exon
chr6:33295508-33295546
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTCTGACCTCTACCCTGCAGGAA
3' ss Score
9.17
5' ss Seq
AAGGTGGCA
5' ss Score
1.02
Exon sequences
Seq C1 exon
GGTAGCCATCTCTGTACTGTCAACCTGGCTGGCCTCTCACCCTGAGGATTTTGGCTCTGAGGCCAAGGGTCAGCTTGACCGGCTTGAGAGCTTCTTACTTCAGACAGGGTATGCAGCAGGGAAGGGTGTTGGGGGGGGCAGCGCTGACCTCATCCGCAATCTCCGGTCCCGGGTGGACCCCCAGGCCCCCGACCTTCCTAAGCCCCTGGCCCTCCCCGGCGATCCCCCTGCTGACCCCACGGATGTCCTGGTGTTCCTCGCTGACCACTTGGCCGAACAGCTGACCCTGCTAGATGCG
Seq A exon
GAACTTTTTCTCAATTTGATCCCCTCTCAGTGCCTGGGAGGCCTGTGGGGTCACAGAGACCGGCCAGGACATTCTCACCTCTGCCCATCTGTCCGAGCTACTGTCACACAGTTTAACAAG
Seq C2 exon
AGGGCCCGGCTCCTGGAGAAGTGGATCCGCGTGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237441_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=0.143 C2=0.143
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(31.6=31.0),PF0061714=RasGEF=PU(7.2=16.0)
A:
PF0061714=RasGEF=FE(37.2=100)
C2:
PF0061714=RasGEF=FE(37.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTGACCGGCTTGAGAG
R:
GATCCACTTCTCCAGGAGCCG
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains