RnoEX6061763 @ rn6
Exon Skipping
Gene
ENSRNOG00000000474 | Rgl2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:RGD Symbol;Acc:1302985]
Coordinates
chr20:5462775-5463779:-
Coord C1 exon
chr20:5463482-5463779
Coord A exon
chr20:5462970-5463221
Coord C2 exon
chr20:5462775-5462878
Length
252 bp
Sequences
Splice sites
3' ss Seq
CTATGACCTCTGCCCTGCAGGAG
3' ss Score
8.16
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGTAGCCATCTCTGTACTTTCAACCTGGCTGGCCTCTCACCCTGAGGATTTTGGCTCTGAGGTCAAGGGTCAACTTGACCGGCTTGAGAGCTTCTTGCTTCGGACAGGGTATGCAGCACGGGAGGGTGTTGTGGGGGGCAGTGCTGACCTCATCCGAAACCTCCGGGCCCGGGTGGACCCCCGGGCCCCCGACCTTCCTAAGCCCCTGGCCCTTCCTGACGATTCCCCTGCTGACCCCACGGATGTCCTGGTGTTCCTCGCTGACCACTTGGCCGAACAGCTGACCCTGCTTGATGCG
Seq A exon
GAGCTGTTTCTCAGTCTGATCCCCTCTCAGTGTTTGGGAGGCCTATGGGGTCACAGAGACCGGCCAGGACATTCTCATCTCTGCCCGTCTGTCCGAGCTACCGTCACGCAGTTCAACAAGGTGGCGGGGGCAGTAGTTAGCTCTGTCCTGGGGGCCACCCCAACTGGAGAGGGGCCAAGAGAGGTGACTGTGAGGCCACTCCGACCCCCACAGAGGGCCCGGCTCCTGGAGAAGTGGATCCGTGTGGCTGAG
Seq C2 exon
GAATGCCGCCTGCTTAGGAACTTCTCCTCAGTGTATGCTGTTGTGTCCGCTCTGCAGTCCAGCCCTATCCATAGGCTTCGGGCGGCCTGGGGGGAGACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000474-'12-13,'12-11,14-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.179 C2=0.000
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(31.6=31.0),PF0061714=RasGEF=PU(7.2=16.0)
A:
PF0061714=RasGEF=FE(37.2=100)
C2:
PF0061714=RasGEF=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGCTCTGAGGTCAAGGGT
R:
GAGCGGACACAACAGCATACA
Band lengths:
301-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]