BtaEX0031428 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043981 | SBF2
Description
Bos taurus SET binding factor 2 (SBF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001103237]
Coordinates
chr15:43416546-43427703:+
Coord C1 exon
chr15:43416546-43416691
Coord A exon
chr15:43419008-43419206
Coord C2 exon
chr15:43427507-43427703
Length
199 bp
Sequences
Splice sites
3' ss Seq
AACCTGTTTCTGCCATCAAGTTT
3' ss Score
2.66
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CACTTTCTCGAAAACCATTGTGAAAGGTGCTAAAAGGGCAGGCAAAATGACGATTGGGCGGCAGTATTTACTGAAGAGGAGGACAGGGACGATTGTGGAAGAGAGAGTGAGCCGTCCTGGATGGAATGAAGACGATGACGTATCTG
Seq A exon
TTTCAGATGATAGTGAACTCCCCACGAGTACCACTCTAAAGGCCTCAGAGAAATCTACAATGGAACAGCTAGTAGAAAAAGCTTGTTTCAGAGACTATCAGCGTTTGGGTTTGGGAACCATAAGTGGCAGCTCCTCTCGCTCTAAACCAGAGTACTTTCGAATCACTGCCTCCAACAGGATGTACTCACTCTGCCGGAG
Seq C2 exon
CTATCCTGGCCTTTTAGTTGTACCTCAAGCTGTACAGGACAGTAGTTTACCAAGAGTAGCCCGCTGCTATCGACACAATCGCCTGCCTGTTGTATGTTGGAGAAACTCAAGAAGCAGTACCCTGCTCCTCCGATCTGGAGGATTCCATGGAAAGGGAGTGGTTGGCCTTTTTAAGTCTCAGAACTCCCCTCAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043981_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.248 A=0.245 C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
PF066029=Myotub-related=PU(14.1=91.0)
C2:
PF066029=Myotub-related=FE(15.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGGACAGGGACGATTG
R:
AAAGGCCAACCACTCCCTTTC
Band lengths:
242-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development