GgaEX6036915 @ galGal4
Exon Skipping
Gene
ENSGALG00000005716 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr5:8616968-8621646:+
Coord C1 exon
chr5:8616968-8617113
Coord A exon
chr5:8620854-8621052
Coord C2 exon
chr5:8621450-8621646
Length
199 bp
Sequences
Splice sites
3' ss Seq
TTAAAGATTTTTAACTTTAGTTT
3' ss Score
4.42
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TACCTTCTCAAAAAGCATTGTGAAAGGAGCAAAACGTGCTGGGAAGATGACAATTGGTCGCCAGTATTTATTAAAGAAGAAGACGGGCACAATAATGGAAGAAAGAGGGAATCGTCCAGGCTGGAATGAAGATGATGATGTCTCTG
Seq A exon
TTTCAGATGACAGTGACCTGCACACAAGTGGTACCCTAAAAGCATCAGAGAAGTCAACAATGGAGCAATTAGTAGAAAGAGCCTGTTTCAGAGACTATCAGCGTTTGGGACTAGGGACCATCAGTAGTAATACTTCTCGCTCAAAAATGGAATACTTGAGAATAACTGCACTGAACAGAATGTATTCACTTTGCAGAAG
Seq C2 exon
TTATCCTGGGCTTCTGGTAGTACCTCAGTCTGTTCAAGACAGCAGTTTGCAGAGAGTTGCTCGCTGTTACCGTCACAATCGCCTACCAGTTGTGTGCTGGAGAAACACAAAAAACAGTTCTCTTCTACTTAGATCTGGGGGCTTTCATGGCAAAGGTGTTGTTGGCCTCTTCAAATCCCAAAACACACATACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716-'38-50,'38-48,40-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=0.149 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF066029=Myotub-related=PU(13.0=89.6)
C2:
PF066029=Myotub-related=FE(14.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGACGGGCACAATAATGGA
R:
TGAAGAGGCCAACAACACCTT
Band lengths:
242-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]