MmuEX6013141 @ mm9
Exon Skipping
Gene
ENSMUSG00000038371 | Sbf2
Description
SET binding factor 2 [Source:MGI Symbol;Acc:MGI:1921831]
Coordinates
chr7:117495107-117508184:-
Coord C1 exon
chr7:117508039-117508184
Coord A exon
chr7:117505554-117505752
Coord C2 exon
chr7:117495107-117495303
Length
199 bp
Sequences
Splice sites
3' ss Seq
AACCTATTTCTGTCTGTCAGTTT
3' ss Score
7.68
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
AACTTTCTCAAAAACAATTGTGAAAGGTGCCAAGAAGGCAGGAAAAATGACAATTGGGAGGCAGTATTTATTAAAGAAGAGAACAGGAACAATTGTGGAAGAGAGAGTAAATCGTCCTGGGTGGAATGAAGAAGATGATATTTCTG
Seq A exon
TTTCAGATGATAGTGAACTTCCCACAAGTACAACCTTGAAGGCCTCAGAGAAGTCGACAATGGAACAGTTGGTGGAAAAAGCGTGTTTCAGAGATTATCAGCGGTTAGGTTTGGGAACCATAAGTGGCAACTCCTCTCGTTCAAAACCAGAGTATTTCCGAGTCACTGCCTCCAACAGGCTGTATTCGCTATGCCGGAG
Seq C2 exon
CTATCCTGGCCTTTTAGTCATACCTCAAGCTGTACAAGACAGTAGTTTACCAAGAGTAGCCCGCTGCTATCGACACAATCGCCTGCCCGTCGTATGTTGGAAGAACTCGAGAAGTGGTACTCTGCTCCTCCGATCTGGAGGATTCCATGGGAAGGGAGTTGTTGGTCTATTCAAGTCACAGAACTCCCCTCAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038371-'38-41,'38-37,39-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.245 A=0.211 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF066029=Myotub-related=PU(13.3=91.0)
C2:
PF066029=Myotub-related=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGAAAAATGACAATTGGGA
R:
ATCGGAGGAGCAGAGTACCAC
Band lengths:
244-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: