MmuEX6013141 @ mm10
Exon Skipping
Gene
ENSMUSG00000038371 | Sbf2
Description
SET binding factor 2 [Source:MGI Symbol;Acc:MGI:1921831]
Coordinates
chr7:110351593-110364670:-
Coord C1 exon
chr7:110364525-110364670
Coord A exon
chr7:110362040-110362238
Coord C2 exon
chr7:110351593-110351789
Length
199 bp
Sequences
Splice sites
3' ss Seq
AACCTATTTCTGTCTGTCAGTTT
3' ss Score
7.68
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
AACTTTCTCAAAAACAATTGTGAAAGGTGCCAAGAAGGCAGGAAAAATGACAATTGGGAGGCAGTATTTATTAAAGAAGAGAACAGGAACAATTGTGGAAGAGAGAGTAAATCGTCCTGGGTGGAATGAAGAAGATGATATTTCTG
Seq A exon
TTTCAGATGATAGTGAACTTCCCACAAGTACAACCTTGAAGGCCTCAGAGAAGTCGACAATGGAACAGTTGGTGGAAAAAGCGTGTTTCAGAGATTATCAGCGGTTAGGTTTGGGAACCATAAGTGGCAACTCCTCTCGTTCAAAACCAGAGTATTTCCGAGTCACTGCCTCCAACAGGCTGTATTCGCTATGCCGGAG
Seq C2 exon
CTATCCTGGCCTTTTAGTCATACCTCAAGCTGTACAAGACAGTAGTTTACCAAGAGTAGCCCGCTGCTATCGACACAATCGCCTGCCCGTCGTATGTTGGAAGAACTCGAGAAGTGGTACTCTGCTCCTCCGATCTGGAGGATTCCATGGGAAGGGAGTTGTTGGTCTATTCAAGTCACAGAACTCCCCTCAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038371-'70-61,'70-58,72-61=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=0.205 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF066029=Myotub-related=PU(13.3=91.0)
C2:
PF066029=Myotub-related=FE(14.4=100)
Main Skipping Isoform:
ENSMUST00000033058fB16271
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGAAAAATGACAATTGGGA
R:
ATCGGAGGAGCAGAGTACCAC
Band lengths:
244-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types