RnoEX6004311 @ rn6
Exon Skipping
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:174993623-175006045:-
Coord C1 exon
chr1:175005900-175006045
Coord A exon
chr1:174996803-174997001
Coord C2 exon
chr1:174993623-174993819
Length
199 bp
Sequences
Splice sites
3' ss Seq
AACCTATTTCTGTCTGTCAGTTT
3' ss Score
7.68
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
AACTTTCTCAAAAACAATTGTGAAAGGTGCCAAGAAGGCAGGAAAAATGACAATTGGGAGGCAGTATTTATTAAAGAAGAGAACAGGAACAATTGTGGAAGAGAGGGCAAATCGTCCAGGGTGGAATGAAGAAGATGATATTTCTG
Seq A exon
TTTCAGATGATTGTGAACTCCCCACAAGTACAACTCTGAAGGCCTCAGAGAAATCTACAATGGAACAGTTGGTGGAAAAGGCATGTTTCAGAGATTATCAGCGGTTAGGTTTGGGAACCATAAGTGGCAGCTCCTCCCGTTCAAAACCAGAGTATTTCCGAGTCACTGCCTCCAACAGGCTATATTCGCTGTGCCGGAG
Seq C2 exon
CTATCCTGGCCTTTTAGTCATACCTCAAGCTGTACAAGACAGTAGTTTACCAAGAGTAGCCCGCTGCTATCGGCACAATCGCCTGCCCGTCGTATGTTGGAAGAATTCAAGAAGTGGTACTCTGCTCCTCCGATCTGGAGGATTCCATGGGAAGGGAGTTGTTGGTCTGTTCAAATCACAGAACTCCCCTCAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812-'47-57,'47-55,50-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.060 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF066029=Myotub-related=PU(13.3=91.0)
C2:
PF066029=Myotub-related=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAGAGGGCAAATCGTCC
R:
GGCTTGAGGGGAGTTCTGTGA
Band lengths:
246-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]