HsaEX6000765 @ hg19
Exon Skipping
Gene
ENSG00000133812 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:2135]
Coordinates
chr11:9853771-9864317:-
Coord C1 exon
chr11:9864172-9864317
Coord A exon
chr11:9861045-9861243
Coord C2 exon
chr11:9853771-9853967
Length
199 bp
Sequences
Splice sites
3' ss Seq
ATCTGTCTCTACCATCACAGTTT
3' ss Score
6.42
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TACCTTCTCAAAAACAATTGTGAAAGGTGCCAAAAGGGCAGGGAAAATGACAATTGGGCGGCAATATTTACTGAAGAAGAAGACAGGGACAATTGTGGAAGAAAGAGTAAATCGTCCTGGATGGAATGAAGATGATGATGTATCTG
Seq A exon
TTTCAGATGAGAGTGAGCTCCCCACAAGTACCACCCTGAAGGCCTCCGAGAAGTCTACAATGGAACAGTTGGTGGAAAAAGCTTGTTTCAGAGACTATCAGCGTTTAGGTTTAGGAACCATAAGTGGCAGCTCTTCCCGTTCAAGACCCGAGTATTTTAGAATTACTGCCTCCAACAGGATGTATTCACTCTGCCGGAG
Seq C2 exon
CTATCCTGGCCTTTTAGTCGTACCTCAAGCTGTACAGGACAGTAGTTTACCAAGAGTAGCTCGCTGCTATCGACACAATCGCCTGCCTGTTGTATGTTGGAAGAACTCAAGAAGTGGTACTCTGCTCCTCCGATCTGGAGGATTCCATGGGAAGGGAGTCGTTGGTCTTTTCAAATCTCAGAACTCCCCTCAGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133812-'33-36,'33-34,34-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=0.239 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
PF066029=Myotub-related=PU(14.1=91.0)
C2:
PF066029=Myotub-related=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAATGACAATTGGGCGGC
R:
CCAGATCGGAGGAGCAGAGTA
Band lengths:
243-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)