DreEX6008309 @ danRer10
Exon Skipping
Gene
ENSDARG00000059460 | sbf2
Description
SET binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-030911-10]
Coordinates
chr7:66889790-66893864:+
Coord C1 exon
chr7:66889790-66889917
Coord A exon
chr7:66890248-66890449
Coord C2 exon
chr7:66893668-66893864
Length
202 bp
Sequences
Splice sites
3' ss Seq
GTTTATTCTTAATGTTTCAGTCT
3' ss Score
6.95
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
Exon sequences
Seq C1 exon
CACGCTATCAAAGACGATTGTGAAAGGGGCTATAAAGGCCGGTAAGATCACAATGGGTCGCCAGTCCACCCTGAAGAAAAACGAGAAGGGCAGTCGCATGACGTGGCATGAGGATGATGACATCTCCA
Seq A exon
TCTCAGATGACGGAGAGCCTCCCTCCAGCAACACACTAAAGGCCTCAGAGAAGTCCACTATGGAGCAGTTGGTAGAGCGAGCCTGTTTTCGGGACTATCAGAGGTTGGGTCTGGGTACCATCAGTGCTAATTCCACACGGTTGAAGAGTGGAGAGCAGTTTCGCGTTACAGCAGTCAACAGACTGTATTCACTGTGTCGCAG
Seq C2 exon
CTATCCTGGTCTCCTGGTGATTCCTCACACTGTGCAAGACAGCAGTCTCCAGAAGGTGTCCCGCTGCTACCGGCACAACCGTCTGCCGGTCGTGTGTTGGAAACACCCTCGCACCAAAGCCGTTTTACTCCGTTCAGGAGGTTTCCATAGCAAGAGTGTGGTTGGCCTTTTCAAGTCTCAGAATCCTTCGTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059460-'27-30,'27-29,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.568 A=0.265 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
PF066029=Myotub-related=PU(12.6=89.7)
C2:
PF066029=Myotub-related=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACGATTGTGAAAGGGGCT
R:
ACTTGAAAAGGCCAACCACACT
Band lengths:
294-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]