BtaEX0031438 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020780 | SBNO2
Description
Bos taurus strawberry notch homolog 2 (Drosophila) (SBNO2), mRNA. [Source:RefSeq mRNA;Acc:NM_001077911]
Coordinates
chr7:45212264-45213563:-
Coord C1 exon
chr7:45213394-45213563
Coord A exon
chr7:45212832-45212963
Coord C2 exon
chr7:45212264-45212399
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCACCACGGCCATAGATG
3' ss Score
5.29
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GCCCCTTGTGCCCCCCACAGCGGGACCTGCATGGCCCCGGAGTCCTGGAGCGGGTTGAGCGGCTGAAGCAGGACCTGCTGGCCAAGGTGCAGGCGCTGGGCCGGGAGCTGCCAGTCAACACCCTGGATGAGCTCATTGACCAGCTAGGGGGCCCAGAGTGCGTGGCTGAG
Seq A exon
ATGACCGGCAGGAAGGGCCGTGTAGTGTCCAGACCTGACGGGACGGTGGCGTTTGAGTCACGAGCGGAGCAGGGTCTCTCCATTGATCACGTGAACCTCAGGGAGAAGGAACGCTTCATGAGTGGGGAGAAG
Seq C2 exon
CTTGTGGCCATCATCTCAGAGGCCTCCAGCTCCGGTGTCTCCCTCCAAGCTGACCGCCGGGTGCAGAACCAGCGGCGCCGGGTGCACATGACGCTGGAGCTGCCCTGGAGCGCTGACCGAGCCATCCAGCAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020780-'27-33,'27-32,28-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.318 C2=0.109
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=PU(6.1=29.8)
A:
PF138711=Helicase_C_4=FE(15.4=100)
C2:
PF138711=Helicase_C_4=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAGCGGCTGAAGCAGG
R:
CAAACTGCTGGATGGCTCGG
Band lengths:
253-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development