HsaEX6091497 @ hg19
Exon Skipping
Gene
ENSG00000064932 | SBNO2
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:29158]
Coordinates
chr19:1112401-1113703:-
Coord C1 exon
chr19:1113534-1113703
Coord A exon
chr19:1112817-1112948
Coord C2 exon
chr19:1112401-1112536
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGTCCCTGTCTCGGCTGCAGATG
3' ss Score
10.37
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
GACCCCTGTGCCTCCTGCAGAGAGACCCGCATGGCCCCGGGGTCCTGGAGCGGGTGGAGCGGCTGAAGCAGGATCTGCTGGACAAAGTGCGGCGGCTGGGCCGGGAACTGCCAGTCAACACCCTGGACGAGCTCATCGACCAGCTGGGCGGCCCCCAGCGGGTGGCGGAG
Seq A exon
ATGACCGGCAGGAAAGGCCGCGTGGTGTCCAGGCCCGACGGGACGGTGGCCTTCGAGTCGCGGGCAGAGCAGGGTCTGTCCATCGACCACGTGAACCTCAGGGAGAAGCAGCGCTTCATGAGCGGCGAGAAG
Seq C2 exon
CTCGTGGCCATCATCTCGGAGGCCTCCAGCTCGGGTGTCTCCCTCCAAGCCGACCGCCGTGTCCAGAACCAGCGGCGCCGCGTGCACATGACCTTGGAGCTGCCGTGGAGCGCCGACCGCGCCATCCAGCAGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064932-'27-29,'27-28,28-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.443 A=0.341 C2=0.174
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=PU(6.1=29.8)
A:
PF138711=Helicase_C_4=FE(15.4=100)
C2:
PF138711=Helicase_C_4=FE(16.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGAGAGACCCGCATG
R:
CAGCTCCAAGGTCATGTGCAC
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)