GgaEX1050955 @ galGal4
Exon Skipping
Gene
ENSGALG00000002672 | SBNO2
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr28:2866625-2867535:-
Coord C1 exon
chr28:2867360-2867535
Coord A exon
chr28:2867028-2867159
Coord C2 exon
chr28:2866625-2866760
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCCCTGTCTTTTCTGTGCAGATG
3' ss Score
11.73
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTAATTTTCACATGCTGCCTTCCCATAAAGAGATGCATGGCCTGAGAGAACTGGAGCATGTGGAAAAGATGAAGCAGGACCTACTAGCAAAAGTAAAAGCACTGGGCAAAGAGCTACCTCTCAATACCTTGGATGAACTAATCAATCACTTTGGGGGACCGGAGCACGTGGCTGAG
Seq A exon
ATGACTGGGCGGAAGGGCCGGGTGGTTTGCAGGCCAGATGGCTCTGTCATGTTTGAGTCTCGTGCAGAGCAAGGCCTCTCTATTGACCACGTCAACCTGAAGGAGAAGGAACGTTTTATGAATGGGGAGAAG
Seq C2 exon
CTTGTAGCAATAATCTCTGAGGCCTCCAGCTCAGGAATCTCTCTCCAAGCAGACAGACGGGTGAAAAACCAGAAGCGCCGCGTCCACATGACACTGGAGCTGCCCTGGAGTGCAGACCGTGCCATTCAGCAGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002672_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=0.114 C2=0.109
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=PU(6.1=28.8)
A:
PF138711=Helicase_C_4=FE(15.4=100)
C2:
PF138711=Helicase_C_4=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCACATGCTGCCTTCCCA
R:
CGCTTCTGGTTTTTCACCCGT
Band lengths:
249-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]