RnoEX0078212 @ rn6
Exon Skipping
Gene
ENSRNOG00000013987 | Sbno2
Description
strawberry notch homolog 2 [Source:RGD Symbol;Acc:1307194]
Coordinates
chr7:12510938-12511981:+
Coord C1 exon
chr7:12510938-12511107
Coord A exon
chr7:12511519-12511650
Coord C2 exon
chr7:12511846-12511981
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCCTCCATCCCCAACCACAGATG
3' ss Score
6.97
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GTCCCCTGTACCCACTTCAGAGAGACCTACAGGGCCCTGGTGTCCTGGAGCGGGTGGAACGGCTGAAACAGGGCCTGCTGGCAAAGGTGCGAGCACTGGGCCGGGAGCTGCCTGTGAACACATTGGACCAGCTCATCCACCAGCTTGGGGGCCCGGAGTGTGTGGCTGAG
Seq A exon
ATGACTGGCAGGAAAGGCCGAGTGGTATCGAGGCCCGACGGGTCAGTGGTCTTTGAGTCCAGAGCAGAGCAGGGCCTGTCCATCGACCATGTGAACCTCAGGGAGAAGCAGCGTTTCATGAGCGGCGAGAAG
Seq C2 exon
CTCGTGGCTATTATCTCTGAGGCCTCCAGCTCTGGTGTCTCCCTCCAAGCCGACCGGCGAGTCCAGAACCAGAGACGCCGGGTACACATGACCTTGGAGCTGCCTTGGAGCGCAGACCGAGCCATCCAACAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013987-'31-34,'31-33,32-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=0.136 C2=0.130
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=PU(6.1=29.8)
A:
PF138711=Helicase_C_4=FE(15.4=100)
C2:
PF138711=Helicase_C_4=FE(16.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCTGTACCCACTTCAGA
R:
TCTCTGGTTCTGGACTCGCC
Band lengths:
245-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]