MmuEX0041088 @ mm9
Exon Skipping
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:79523729-79525076:-
Coord C1 exon
chr10:79524907-79525076
Coord A exon
chr10:79524061-79524192
Coord C2 exon
chr10:79523729-79523864
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCCACCTCCCCCAACCACAGATG
3' ss Score
8.42
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GTTCCCTGTACCCACTTCAGAGAGACCTGCAGGGCCCTGGTGTCGTGGAACGGGTAGAACGGCTGAAACAGGGTCTGCTTGCCAAGGTGCGAGCGCTGGGCCGGGAGCTGCCAGTCAACACGTTGGACCAGCTCATCCACCAACTTGGGGGTCCTGAGTGTGTGGCCGAG
Seq A exon
ATGACCGGCAGGAAAGGCCGAGTGGTATCGAGGCCTGATGGGACAGTGGTCTTTGAGTCCAGAGCAGAACAGGGCCTGTCCATCGACCATGTGAACCTCAGGGAGAAGCAGCGCTTCATGAGCGGCGAGAAG
Seq C2 exon
CTCGTGGCTATTATCTCTGAGGCCTCCAGCTCAGGTGTCTCCCTCCAAGCCGACCGTCGAGTCCAGAACCAGCGGCGCCGGGTACACATGACCCTGGAGCTGCCTTGGAGTGCAGACCGTGCCATTCAACAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.159 C2=0.130
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=PU(6.1=29.8)
A:
PF138711=Helicase_C_4=FE(15.4=100)
C2:
PF138711=Helicase_C_4=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGAACGGCTGAAACAGGG
R:
ACTGTTGAATGGCACGGTCTG
Band lengths:
251-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: