DreEX6098665 @ danRer10
Exon Skipping
Gene
ENSDARG00000016188 | SBNO2 (1 of 2)
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr22:17673411-17676147:-
Coord C1 exon
chr22:17676026-17676147
Coord A exon
chr22:17673632-17673763
Coord C2 exon
chr22:17673411-17673546
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGCATTGTTTATGTGCCCAGATG
3' ss Score
6.5
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CACGGTTAGAGGACATGAAACAAGGGCTTCTCAACAAGATCGCCGAGCTGGGGAAAGAACTACCTCTCAACACATTGGATGAGCTCATTGACAAATTTGGAGGGCCAGAAAAAGTATCAGAG
Seq A exon
ATGACAGGACGGAAAGGCCGAGTGGTACGTCGACCTGATGGCAGTGTCCAATATGAGTCCCGTGCTGAGCAAGGCCACACCATCGACCAAATCAACATCAAAGAGAAAGATCGGTTCATGAATGGCGAGAAG
Seq C2 exon
TTGGTAGCTATCATATCTGAAGCAGCCAGTTCAGGGATTTCACTTCAGGCTGACAGAAGAGTTAAGAACCAGTGCCGAAGGGTTCACATGACCCTGGAGTTGCCTTGGAGTGCAGACAGAGCCATCCAGCAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016188-'21-20,'21-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=0.750 C2=0.043
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=PU(6.1=41.5)
A:
PF138711=Helicase_C_4=FE(15.5=100)
C2:
PF138711=Helicase_C_4=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGACATGAAACAAGGGCT
R:
CAAACTGCTGGATGGCTCTGT
Band lengths:
251-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]