MmuEX0041088 @ mm10
Exon Skipping
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:80060984-80062331:-
Coord C1 exon
chr10:80062162-80062331
Coord A exon
chr10:80061316-80061447
Coord C2 exon
chr10:80060984-80061119
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCCACCTCCCCCAACCACAGATG
3' ss Score
8.42
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GTTCCCTGTACCCACTTCAGAGAGACCTGCAGGGCCCTGGTGTCGTGGAACGGGTAGAACGGCTGAAACAGGGTCTGCTTGCCAAGGTGCGAGCGCTGGGCCGGGAGCTGCCAGTCAACACGTTGGACCAGCTCATCCACCAACTTGGGGGTCCTGAGTGTGTGGCCGAG
Seq A exon
ATGACCGGCAGGAAAGGCCGAGTGGTATCGAGGCCTGATGGGACAGTGGTCTTTGAGTCCAGAGCAGAACAGGGCCTGTCCATCGACCATGTGAACCTCAGGGAGAAGCAGCGCTTCATGAGCGGCGAGAAG
Seq C2 exon
CTCGTGGCTATTATCTCTGAGGCCTCCAGCTCAGGTGTCTCCCTCCAAGCCGACCGTCGAGTCCAGAACCAGCGGCGCCGGGTACACATGACCCTGGAGCTGCCTTGGAGTGCAGACCGTGCCATTCAACAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.202 A=0.159 C2=0.130
Domain overlap (PFAM):
C1:
PF138711=Helicase_C_4=PU(6.1=29.8)
A:
PF138711=Helicase_C_4=FE(15.4=100)
C2:
PF138711=Helicase_C_4=FE(16.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGAACGGCTGAAACAGGG
R:
ACTGTTGAATGGCACGGTCTG
Band lengths:
251-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types