BtaEX0031725 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103953279-103954725:-
Coord C1 exon
chr11:103954527-103954725
Coord A exon
chr11:103954269-103954443
Coord C2 exon
chr11:103953279-103953421
Length
175 bp
Sequences
Splice sites
3' ss Seq
TCCGCTTTGTGCTCCCGAAGAGT
3' ss Score
5.67
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GCCCGAGAAATACGATGACCGCTACAGGTACGACCCCCGCTTCACCGGGAGCTTTGACGATGAGCCCGAGCCACCTCGGGACCCTTACGGGGAGGAGGTGGACCGGCGTAGTGAGCACAGCGAGCACTCGGCACGGAGCCTGCGCAGCGCGCCCAGCCTGCAGAGCCGCCGCAGCAGCTTCAGCGCCCACTCCCACCAG
Seq A exon
AGTCAGGTGTACCGGAGTCATAACGTGCCCTCCGGGTCCTATGAGGTGCCCCCTCCGCCGGGCTCCTTCCACGGTGATTACGCCTACGGCCCCTACGGGAGCGACTTCCATGGCGCACCAGGCTTTCCAGAGTACGGCTACCCCGCCGAGGCCAGCTGGCCCTCCGTGGAGCAAG
Seq C2 exon
CTCCGTCGAGACCCACTTCTCCCGAGAAGTTCTCGGTGCCTCACGTCTGTGCCAGGTTTGGTCCTGGGGGCCAGCTCATCAAAGTGATTCCAAACCTGCCTTCAGAAGGACAGCCTGCGCTGGTTGAAATTCACAGCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.940 A=0.847 C2=0.417
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF129322=Sec16=PU(33.0=70.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAGAAATACGATGACCGC
R:
GTGAGGCACCGAGAACTTCTC
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development