GgaEX1051402 @ galGal4
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr17:7858666-7860927:+
Coord C1 exon
chr17:7858666-7858864
Coord A exon
chr17:7859935-7860112
Coord C2 exon
chr17:7860785-7860927
Length
178 bp
Sequences
Splice sites
3' ss Seq
TACTAATATGATCTATTTAGAGC
3' ss Score
3.66
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
ACATGACCGATATGACGATCGTTGGAGGTACGATCCTCGCTTTACTGGAAGCTTTGATGATGATGCTGAGCCTCACAGAGATCCTTATGGAGATGAGTTTGATAGGCGCAGTGTTCACAGTGAGCATTCTGGGCACAGCCTCCGGAGCTCCCACAGTGTGCACAGTCACCGGAGCAGCTTCAGCTCTCGTTCCCAACAA
Seq A exon
AGCCAGCTGTATAGAAGTAACCACGATTTAACGGCTAATGCGTATGAAACTACTGCACAGGCAGTGTCACTGCACACAGATTACCCATACGGTGGATATGCTCCTAACTTTGATGGACAACAGCCTTTTACAGATTATGGCTACTCGACTGAAACTGGATGGTCAGCTGTAGATCAAG
Seq C2 exon
TGCCCTTAAGGCCCTCAACGCCTGAGAAATTTTCAGTGCCTCACCTGTGTGCCAGGTTTGGTCCTGGGGGCTTCTTAATAAAAGTACTGCCAAACCTGCCTTCGGAAGGACAGCCAGCCCTGGTTGAAATACACAGCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364-'9-14,'9-10,10-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=0.517 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF129322=Sec16=PU(33.0=70.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATCCTCGCTTTACTGGAAGC
R:
TAAGAAGCCCCCAGGACCAAA
Band lengths:
246-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]