RnoEX0078954 @ rn6
Exon Skipping
Gene
ENSRNOG00000019122 | Sec16a
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:2322350]
Coordinates
chr3:3875725-3876944:-
Coord C1 exon
chr3:3876746-3876944
Coord A exon
chr3:3876431-3876605
Coord C2 exon
chr3:3875725-3875867
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGCTTGATCTCTTTCCCAAGAGT
3' ss Score
5.55
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GCCTGAGAAATGTGATGATCACTGGAGGTATGACCCTCGCTTCACTGGGAGCTTCGATGATGACACTGAGCTCCACAGGGACCCCTATGGAGAAGAAGTAGACAGACGCAGCATCCACAGCGAGCACTCAGCCCGGAGCCTGCGCAGTACTCACAGCCTGCCCAGCCGCCGCAGCAGCCTCAGCTCCCATTCACACCAG
Seq A exon
AGTCAGATTTACAGAAGCCACCATGTGACTGGCGGTTCCTTTGAGGCCCCCCATGCCCCAGGCTCATTTCATGGTGATTATGCCTATGGTACCTATGCCAGCAATTTCAGCGGTGCCCATGGTTTTCCAGAGTACAGCTACCCTGCAGACACCTCCTGGCCTGCTGCGGAGCAAG
Seq C2 exon
TTCCATCAAGACCGACCTCTCCTGAGAAGTTTACAGTGCCTCACGTCTGTGCCAGGTTTGGTCCTGGTGGTCAGCTCCTCAAAGTGATACCCAACCTGCCTTCAGAAGGACAGCCCGCATTGGTGGAGATCCACAGCTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019122-'11-14,'11-10,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.687 A=0.525 C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF129322=Sec16=PU(33.0=70.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCACTGGGAGCTTCGATG
R:
CACTTTGAGGAGCTGACCACC
Band lengths:
247-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]