BtaEX0032088 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007329 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr12:19142574-19147324:+
Coord C1 exon
chr12:19142574-19142899
Coord A exon
chr12:19146544-19146632
Coord C2 exon
chr12:19147195-19147324
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTGTCTATTTTTGTTGACAGCAT
3' ss Score
6.45
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
AGGACTCAAGCTCAAACCAAGTTGAAGATTGTAAAGACAGCCCTGTGATTGATTCCGATGTGATAGATATAACCAAGTGTAGAGAAGACACTCCGCCAGGGGACACATGTCACCAAGCAGTCACACTGGATAACAAGAATGAGGTTCAAATACAAAAGCCCCAAGAGGAAAAATCTCCAGCATGTCAAAACCATCAGGTCTTTTGTGGTAAAGAGTTACCGAATGAAACCAAGGATGCTTCATCTGATTCTCTAGAGAAGTTCAATAAAGGGAATGTGTTTCTATTGGATGCCACAAAAGAAGGAAATGTGGGCCGCTTCCTTAAT
Seq A exon
CATAGTTGTTGCCCAAATCTTTTGGTACAGAATGTTTTTGTAGAAACACATGACAGAAATTTTCCCTTGGTGGCGTTCTTCACCAACAG
Seq C2 exon
GTATGTGAAAGCAAGAACAGAACTAACATGGGATTATGGTTATGAAGCTGGGACTATGCCTGAGAAAGAAATCCTCTGCCAATGTGGGGTTAATAAATGCAGAAGAAAAATATTATAAATCTGTAGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007329-'19-22,'19-20,20-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.486 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(34.8=100)
A:
PF0085623=SET=FE(9.4=100)
C2:
PF0085623=SET=PD(4.2=32.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAATGAAACCAAGGATGCT
R:
TCAGGCATAGTCCCAGCTTCA
Band lengths:
172-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development