DreEX0065561 @ danRer10
Exon Skipping
Gene
ENSDARG00000099021 | setdb1b
Description
SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
Coordinates
chr16:22087559-22094037:-
Coord C1 exon
chr16:22093799-22094037
Coord A exon
chr16:22093563-22093651
Coord C2 exon
chr16:22087559-22088213
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTGCGGTCTTTGTCCCACAGCAT
3' ss Score
9.06
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
Exon sequences
Seq C1 exon
CTGTGGTGAAGAGGCAGGTGGCTGTGAAGTCCACACGTGGCATTGCTTTGAAGTCCCACAGTATGATGGTGAAATCAGGTGGAGGGGGTGCAGGAGGCGGTGGGTCAGGCCCGTCTCACGGCCATGGAGGAGGAGGTGGAGACAATGGCCCTAAAAACACCCGCCTGTTCTTTGATGGGGAGGAATCCTGCTACATCATTGATGCCAAACTAGAGGGCAACCTCGGACGCTACCTCAAC
Seq A exon
CATAGCTGCAGCCCCAATCTGTTTGTCCAGAATGTGTTTGTGGACACTCACGACCTGCGCTTTCCCTGGGTGGCCTTCTTTGCTAGCAA
Seq C2 exon
GCGAATCCGAGCAGGGACGGAGCTGACGTGGGACTATAATTATGAGGTAGGCAGTGTGGAGGGCAAGGAACTTCTGTGCTGCTGTGGATCAACAGAATGCAGAGGACGACTGCTGTAACACACTCTTGAACACATGCACTAAAGGTATCTCCTGTTGGGCCACTGAACACTTACTTGGAGCTCCTGGAAGCTGAATTAGTACAGAGATGTCTGTGCTACTGATAAGAACTCTGCAGACACTGAATGAGGGGGAAATTGTTCAGGAACTTACTGAATTTGTAAAATAGGTGTACGTGAGCATGTCCTGCTTCACAGGGTTCCGCCTTAAACCCTAAATGGGCACATTGTGTCTATCACAATGTCTATCTGTGGTTTACGCAGTCCTTCCCATTAATATCCCTCTTTTTTCTTTTCTTTTTTACATGTATGCAATCATCAGTCTCAACACCCTTCTGTTTTGCTTAGTTATATTTGTCCTCTTTTACATCTGATGTAGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099021_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=PD(11.0=37.5),PF0085623=SET=PU(50.0=55.0)
A:
PF0085623=SET=FE(33.0=100)
C2:
PF0085623=SET=PD(14.8=32.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTTCTTTGATGGGGAGG
R:
GTTGATCCACAGCAGCACAGA
Band lengths:
170-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]