HsaEX6033419 @ hg19
Exon Skipping
Gene
ENSG00000143379 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:10761]
Coordinates
chr1:150936006-150937220:+
Coord C1 exon
chr1:150936006-150936217
Coord A exon
chr1:150936471-150936559
Coord C2 exon
chr1:150936726-150937220
Length
89 bp
Sequences
Splice sites
3' ss Seq
TCCTGTCCTTAAACCTACAGCAC
3' ss Score
7.4
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTCCAATGAAGCGTCAAGTGGCAGTAAAATCAACCCGAGGCTTTGCTCTTAAATCAACCCATGGGATTGCAATTAAATCAACCAACATGGCCTCTGTGGACAAGGGGGAGAGCGCACCTGTTCGTAAGAACACACGCCAATTCTATGATGGCGAGGAGTCTTGCTACATCATTGATGCCAAGCTTGAAGGCAACCTGGGCCGCTACCTCAAC
Seq A exon
CACAGTTGCAGCCCCAACCTGTTTGTCCAGAATGTCTTCGTGGATACCCATGATCTTCGCTTCCCCTGGGTGGCCTTCTTTGCCAGCAA
Seq C2 exon
AATCCGGGCTGGGACAGAACTTACTTGGGACTACAACTACGAGGTGGGCAGTGTGGAAGGCAAGGAGCTACTCTGTTGCTGTGGGGCCATTGAATGCAGAGGACGTCTTCTTTAGAGGACAGCCTTCTTCCCAACCCTTCTTGAACTGTCGTTTCCTCAGGAACTGGGTCTTCCTGATTGTTGAACCCTGACCCGAAGTCTCTGGGCTAGCTACTCCCCCCAGCTCCTAGTTGATAGAAATGGGGGTTCTGGACCAGATGATCCCTTCCAATGTGGTGCTAGCAGGCAGGATCCCTTCTCCACCTCCAAAGGCCCTAAAGGGTGGGGAGAGATCACCACTCTAACCTCGGCCTGACATCCCTCCCATCCCATATTTGTCCAAGTGTTCCTGCTTCTAACAGACTTTGTTCTTAGAATGGAGCCTGTGTATCTACTATCTCCAGTTTGTATTATTTCTTGAAAGTCTTTTAACAATATGATAAAACTAAGATTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143379-'40-33,'40-31,42-33=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=PD(19.2=75.0)
A:
PF0085623=SET=FE(6.4=100)
C2:
PF0085623=SET=PD(2.7=30.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGCGAGGAGTCTTGCTA
R:
ACGTCCTCTGCATTCAATGGC
Band lengths:
173-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)