MmuEX0041862 @ mm10
Exon Skipping
Gene
ENSMUSG00000015697 | Setdb1
Description
SET domain, bifurcated 1 [Source:MGI Symbol;Acc:MGI:1934229]
Coordinates
chr3:95323525-95324841:-
Coord C1 exon
chr3:95324692-95324841
Coord A exon
chr3:95324305-95324393
Coord C2 exon
chr3:95323525-95324190
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGTCATCTTTAAACTTACAGCAC
3' ss Score
7.68
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GACCAACAAAGCGCCAGGTGGCAGTAAAATCAACCCGAGGCTTTGCTCTTAAATCAACCCATGGTATTGCCATTAAATCAACCAACATGGCTTCCGTGGACAAGGGGGAGAGTGCACCAGTTCGTAAGAACACACGCCAGTTCTATGATG
Seq A exon
CACAGTTGCAGCCCCAACCTGTTTGTCCAGAATGTGTTTGTGGATACCCATGATCTTCGCTTCCCTTGGGTGGCCTTCTTTGCCAGCAA
Seq C2 exon
GAGAATCCGGGCTGGAACAGAACTCACTTGGGACTACAACTACGAAGTGGGCAGTGTGGAAGGCAAGGAGCTGCTGTGCTGCTGTGGGGCCATTGAATGCAGAGGGAGACTTCTTTAGAGGAAGACTTCCTCACTTTGAGAACGCTTGAACTATCCTTTTCCCCAGGAACTGGGTCTTCCTGACTGTTGAACTCTGACCCCAAGTCTCTGATCTAGCTTCTTCCCAGCTCCTAGTAGATAGAGATGGGGATTCTCAATCAGGACTTTCCCAGCGTGGTGCTAGCAGGCACTAGGGTGGGTAGACATGACCACTCTAGCATCAGCCTGAGGTCCTTCTCATCTTGTATGCATTCATGATTCACATGGGCTGTGTATCTGCCATCCCTGATTTGTATGGTTTCTTGAAAGTCTTCTAACAAGATGGTAAAGTAGAGATTGTGGTTTGTCTTATCTCCTGCCTTGATCTTCCATGTCATTTCCCAGTGGGCAACTATCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015697_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(15.5=100)
A:
PF0085623=SET=FE(6.4=100)
C2:
PF0085623=SET=PD(2.9=32.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGGCTTCCGTGGACAAG
R:
CTCCCTCTGCATTCAATGGCC
Band lengths:
175-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types