RnoEX0079914 @ rn6
Exon Skipping
Gene
ENSRNOG00000021143 | Setdb1
Description
SET domain, bifurcated 1 [Source:RGD Symbol;Acc:1308370]
Coordinates
chr2:196495867-196497130:-
Coord C1 exon
chr2:196496919-196497130
Coord A exon
chr2:196496623-196496711
Coord C2 exon
chr2:196495867-196496505
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGTCATCTTTAAACTTACAGCAC
3' ss Score
7.68
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GACCAACAAAGCGTCAGGTGGCAGTAAAATCAACCCGAGGCTTTGCTCTTAAATCAACCCATGGTATTGCCATTAAATCAACCAACATGGCTTCCGTGGACAAGGGGGAGAGTGCACCAGTTCGTAAGAACACACGCCAGTTCTATGATGGTGAAGAGTCTTGCTACATCATTGATGCCAAACTTGAAGGCAACCTAGGCCGCTACCTCAAT
Seq A exon
CACAGTTGCAGCCCCAACCTGTTTGTCCAGAACGTTTTTGTGGATACCCATGATCTTCGCTTCCCTTGGGTGGCCTTTTTTGCCAGCAA
Seq C2 exon
GAGAATCCGGGCTGGAACAGAACTCACTTGGGATTACAACTATGAAGTGGGCAGTGTGGAAGGCAAGGAACTGCTGTGCTGCTGTGGAGCCATTGAATGCAGAGGGCGGCTTCTCTAGAGGAAGACTCTTCCTCACTCTGAGGATCCCTTCCCCAGGAACTGGGTCTTTCTGACTCCACGTCTCTGATCTGGCTTCTCCCCAGCTCCTAGTAGATAAAAGTGGGGGTCCTAGATCAGGACGTTGCCAGCGTGGTGCTAGCAGGCACTAGGGTGGGATGACCACCCTAGCATCAGCCTGAGGTCCTTCTCATCCCGTATGTGTTCATGATTCACATGCGCCGTGTATCTGGTTTGTATGGTTTCTTGAAAGTCTTCTAACAAGATGATAAAATAGAGCTTGTGGTTTGTCTTCTCTCCTCAGCCCCATCTTGACCTTCCAGGGAGATGTCATTTCCCAATGGCAACTATCATTAGTTTACCCCTTGATTTTATTTGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021143-'49-29,'49-27,52-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(15.5=100)
A:
PF0085623=SET=FE(6.4=100)
C2:
PF0085623=SET=PD(2.9=32.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAGTGCACCAGTTCGTA
R:
CTTCCACACTGCCCACTTCAT
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]