BtaEX6015155 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19844271-19845122:-
Coord C1 exon
chr3:19844911-19845122
Coord A exon
chr3:19844564-19844652
Coord C2 exon
chr3:19844271-19844388
Length
89 bp
Sequences
Splice sites
3' ss Seq
ATCTGTACTTAAACTTACAGCAC
3' ss Score
6.56
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTCCAATGAAGCGCCAAGTGGCAGTAAAATCCACCCGGGGTTTTGCTTTGAAATCAACCCATGGCATTGCCATTAAATCAACCAACATGGCATCTGTGGAAAAGGGGGAGAGTGCACCCATTCGTAAGAACACACGCCAGTTCTATGATGGGGAGGAGTCTTGCTACATCATCGATGCCAAGCTTGAAGGCAACCTGGGCCGCTACCTCAAT
Seq A exon
CACAGTTGCAGCCCTAACCTGTTTGTCCAGAATGTCTTCGTGGATACTCATGATCTCCGCTTCCCGTGGGTGGCCTTCTTCGCCAGCAA
Seq C2 exon
GAGAATCCGGGCTGGCACCGAGCTTACCTGGGACTACAACTATGAGGTGGGCAGCGTGGAAGGCAAGGAGTTGCTTTGCTGCTGCGGGGCCATCGAATGCCGAGGGCGTCTTCTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098-'39-36,'39-33,41-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(15.5=100)
A:
PF0085623=SET=FE(6.4=100)
C2:
PF0085623=SET=PD(2.9=32.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACATGGCATCTGTGGAA
R:
GTAGTCCCAGGTAAGCTCGGT
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]