MmuEX0041867 @ mm9
Exon Skipping
Gene
ENSMUSG00000071350 | Setdb2
Description
SET domain, bifurcated 2 [Source:MGI Symbol;Acc:MGI:2685139]
Coordinates
chr14:60020846-60028355:-
Coord C1 exon
chr14:60028015-60028355
Coord A exon
chr14:60025483-60025571
Coord C2 exon
chr14:60020846-60021253
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTGTTTAACAGCAT
3' ss Score
9.46
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
AGGACTTAAGTTCAAACCCAGCTGGAGATTCTGAAGACACACAGCTGACTGAATCAGACGTGATAGATATAACTGCAAGTAGAGAAGACTCTGCCCCAGCATACAGGTGTAAGCACGCAACCATAGTGGATCGTAAGGACACTAAACAGGTGCTTGAAGTCCCAGGAAAGAAGTCCCAAGAGGAAGAGCCTGCAGCCTCTCAAAGCCAGCAGGCCTTGTGTGATGAGGAGCTGCCAAGTGAGAGGACAAAGATTCCATCTGCTTCCCTGATGCAGCTCAGTAAGGAGAGTCTGTTTCTATTGGATGCTTCAAAAGAAGGAAATGTGGGCCGTTTCCTCAAT
Seq A exon
CATAGTTGCTGTCCAAATCTCTGGGTGCAGAATGTTTTTGTAGAAACACATGACAGGAATTTCCCATTGGTGGCCTTCTTCACCAACAG
Seq C2 exon
GTATGTGAAAGCAAGGACAGAACTAACGTGGGATTATGGTTATGAAGCTGGGGCCACGCCTGCAAAGGAAATCCTCTGCCAATGTGGGTTTAATAAGTGTCGGAAAAAATTAATATAACTTTATATCTGATATCCATCCGTGAACTGAGCTGCTCAATGTATAACAATATCAGTTGTCAAAGAGATTATGGTTAATACTTCTGTTTCCTTTGTTCAGGGTATTGATGTTTTATGTCTAATTTTGTATCTTAGGTTAGAAGCAAAATAAGGGCACTCATCAAGTATCACAGTGTTATTACAGTTAATTAACTTTACATGAGTAGAATATAAATAATATATTTTATGTACATATCATTGTATAATTTGTAACTTTTGTATTTTATATATTAATATAAAATTATACTAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071350-'17-17,'17-16,18-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(36.7=100)
A:
PF0085623=SET=FE(9.4=100)
C2:
PF0085623=SET=PD(4.2=32.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATGTGGGCCGTTTCCTCA
R:
ATTGAGCAGCTCAGTTCACGG
Band lengths:
181-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: