GgaEX1052021 @ galGal4
Exon Skipping
Gene
ENSGALG00000017006 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr1:168518485-168521971:+
Coord C1 exon
chr1:168518485-168518816
Coord A exon
chr1:168519932-168520020
Coord C2 exon
chr1:168521804-168521971
Length
89 bp
Sequences
Splice sites
3' ss Seq
TCATGTATTTTGTTTCACAGCAC
3' ss Score
8.17
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GATCCTCCCAGAAGCAGAGGGTAGAAGACCTGGTGGAAGTTGGACAGACGGAGCCTGCTGAAATGGACAGTGCTGAATGCAGAAGGAAGAGTCTGTCTCTGAAGGGTGTTGCTTGTGGCAGATCAGACGTGCTGAACGATAAATACGTTGTGAAGCCATCCACAAAGGTTCTACAAAAAGCTGACTGCGTAGAGGAAGCTCACAGACAGGCAAAACAAGGCATATTTTGTGTGGAAGCAGACGGTGACAGAACGCTTCTGAAGAATGCTAACAATGAAAATATCTATATACTAGATGCCACAAAAGAAGGAAATGTGGGTCGTTTTCTTAAT
Seq A exon
CACAGCTGCTGCCCCAATCTCTTTGCACAGAGTGTGTTTGTAGAGACGCACAACAGAAGTTTCCCATGGGTTGCATTCTTCACAAACAG
Seq C2 exon
GCATGTGAGAGCTGGAACTGAACTCACGTGGGATTATGGCTATGAAGCTGGAAGTATGCCAGAGACAGAGATTTCCTGTTGGTGTGGAGTTCAGAAATGCAGGAAGAAAACCTTATAGAGCAAGCTTTTCTACTGTCAGCACCTCATGTACATAGAGATTTATATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017006_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=PD(28.4=55.9),PF0085623=SET=PU(39.7=26.1)
A:
PF0085623=SET=FE(39.7=100)
C2:
PF0085623=SET=PD(17.8=32.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGTAGAGGAAGCTCACAGA
R:
CCCACGTGAGTTCAGTTCCAG
Band lengths:
179-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]