BtaEX0033338 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002348 | SLC4A4
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 4 (SLC4A4), mRNA. [Source:RefSeq mRNA;Acc:NM_174605]
Coordinates
chr6:88533514-88540324:+
Coord C1 exon
chr6:88533514-88533675
Coord A exon
chr6:88537631-88537727
Coord C2 exon
chr6:88540245-88540324
Length
97 bp
Sequences
Splice sites
3' ss Seq
GTTGTAAATTTCTTTCACAGTCT
3' ss Score
6.83
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ATCTTGGCACTTGTAGCTGTCAGAAAAGGCATGGACTACCTCTTCTCCCAGCACGACCTCAGCTTCCTTGATGATGTCATTCCAGAAAAGGACAAGAAAAAGAAGGAGGATGAGAAGAAAAAGAAAAAGAAGAAAGGAAGTCTGGACAGTGACAATGATGAT
Seq A exon
TCTGACTGCCCATACTCAGAAAAAGTTCCAAGTATTAAAATTCCAATGGACATCATGGAACAGCAACCTTTCCTAAGTGATAGCAAACCTTCCGACA
Seq C2 exon
GAGAAAGATCACCAACATTCCTTGAACGCCATACATCATGCTGATAAAATTCCTTTCCTTCGGTCACTCGGTATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002348_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=0.263 C2=0.786
Domain overlap (PFAM):
C1:
PF103594=Fmp27_WPPW=FE(63.1=100)
A:
PF103594=Fmp27_WPPW=PD(33.3=84.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCATGGACTACCTCTTCTCC
R:
TGGCGTTCAAGGAATGTTGGT
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development