GgaEX1053596 @ galGal3
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
NA
Coordinates
chr4:51867036-51875485:+
Coord C1 exon
chr4:51867036-51867197
Coord A exon
chr4:51871944-51872040
Coord C2 exon
chr4:51875406-51875485
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTTACACGTTTCTTTCACAGTCT
3' ss Score
9.46
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ATCTTGGCACTTGTAGCAGTCAGAAAAGCCATGGACTACCTCTTCTCCCAGCATGACTTAAGTTTTCTTGATGACGTCATTCCAGAGAAGGACAAGAAAAAGAAAGAGGATGAGAAGAAGAAGAAAAAGAAGAAGGGCAGTCTGGACAGTGACAATGAGGAT
Seq A exon
TCTGACTGCCCCTACTCAGAAAAAGTCCCAAGTATTAAAATACCAATGGACATCATGGAGCAGGAACCTTTCCTAAGTGATAGCAAACCTGCCGACA
Seq C2 exon
AAGAAAAATCACCAACATTCCTTGAACGCCATACGTCGTGCTGATAAAATTCCTTTTCTTCAGTCACACACTATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604-'32-30,'32-29,33-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=0.273 C2=0.571
Domain overlap (PFAM):
C1:
PF103594=Fmp27_WPPW=FE(59.6=100)
A:
PF103594=Fmp27_WPPW=FE(36.0=100)
C2:
PF103594=Fmp27_WPPW=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATGGACTACCTCTTCTCC
R:
TGGCGTTCAAGGAATGTTGGT
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]