HsaEX0059811 @ hg38
Exon Skipping
Gene
ENSG00000080493 | SLC4A4
Description
solute carrier family 4 member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
Coordinates
chr4:71560093-71567083:+
Coord C1 exon
chr4:71560093-71560254
Coord A exon
chr4:71563793-71563889
Coord C2 exon
chr4:71567004-71567083
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTTGTACATTTTTTTCACAGTCT
3' ss Score
7.26
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ATCTTGGCACTTGTAGCTGTCAGAAAAGGCATGGACTACCTCTTCTCCCAGCACGACCTCAGCTTCCTGGATGATGTCATTCCAGAAAAGGACAAGAAAAAGAAGGAGGATGAGAAGAAAAAGAAAAAGAAGAAGGGAAGTCTGGACAGTGACAATGATGAT
Seq A exon
TCTGACTGCCCATACTCAGAAAAAGTTCCAAGTATTAAAATTCCAATGGACATCATGGAACAGCAACCTTTCCTAAGCGATAGCAAACCTTCTGACA
Seq C2 exon
GAGAAAGATCACCAACATTCCTTGAACGCCACACATCATGCTGATAAAATTCCTTTCCTTCAGTCACTCGGTATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080493_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.405 A=0.318 C2=0.710
Domain overlap (PFAM):
C1:
PF103594=Fmp27_WPPW=FE(70.7=100)
A:
NO
C2:
PF103594=Fmp27_WPPW=PD(25.3=70.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCTCTTCTCCCAGCACGA
R:
ATCAGCATGATGTGTGGCGTT
Band lengths:
172-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development