DreEX0073063 @ danRer10
Exon Skipping
Gene
ENSDARG00000013730 | slc4a4a
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4a [Source:ZFIN;Acc:ZDB-GENE-060526-274]
Coordinates
chr5:45150987-45154781:-
Coord C1 exon
chr5:45154617-45154781
Coord A exon
chr5:45151700-45151793
Coord C2 exon
chr5:45150987-45151066
Length
94 bp
Sequences
Splice sites
3' ss Seq
GACTGTTTCTCCCTGTGCAGTCT
3' ss Score
8.52
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ATCTTGGCTCTGGTAGCTGTGAGGAAGGCGCTGGACTATATTTTCTCTCAGCATGACCTCAGCTTCCTGGATGACGTCATACCTGAGAAGGACAAGAAAAAGAAGGAAGATGAGAAGAAAAAGAAAAAGAAGAAGCAAGGGAGCATTGACAGCGACATGGAAGAT
Seq A exon
TCTGACTATCCTTACAATGAGAATGTCCCCAGCATTAAAATCCCAATGGACATGATGGAGCAGGAGCCTTTTTTAGGAGATAAGGCCTCTGACA
Seq C2 exon
GAGAAAAGTCCGCTTCAATCCTGGACCGATATTCATCGTGCTGAAAAGCGCCACTACTTTCAGTCCAGTCCAATGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013730_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
PF103594=Fmp27_WPPW=FE(63.5=100)
A:
PF103594=Fmp27_WPPW=PD(32.9=87.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATGACCTCAGCTTCCTG
R:
GGACTGAAAGTAGTGGCGCTT
Band lengths:
183-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]