RnoEX0082842 @ rn6
Exon Skipping
Gene
ENSRNOG00000003134 | Slc4a4
Description
solute carrier family 4 member 4 [Source:RGD Symbol;Acc:68936]
Coordinates
chr14:20481026-20488449:-
Coord C1 exon
chr14:20488288-20488449
Coord A exon
chr14:20483399-20483495
Coord C2 exon
chr14:20481026-20481105
Length
97 bp
Sequences
Splice sites
3' ss Seq
GTTGTCCGTTTTTTTCACAGTCT
3' ss Score
9.17
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ATCCTGGCCCTGGTAGCTGTCAGAAAAGGTATGGACTACCTCTTCTCCCAGCACGACCTCAGCTTCCTTGATGATGTCATTCCAGAGAAGGACAAGAAAAAGAAGGAGGATGAGAAGAAGAAGAAAAAGAAGAAAGGAAGTCTGGATAGCGACAACGACGAT
Seq A exon
TCTGACTGCCCATACTCAGAAAAGGTCCCCAGTATTAAAATTCCAATGGACATCACGGAACAGCAACCTTTCCTAAGTGATAACAAACCCTTGGACA
Seq C2 exon
GAGAAAGATCCTCAACATTCCTTGAACGCCACACATCATGCTGATAAAATTCCTTTCCTTGAGTCACTGGGTTTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003134_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.182 C2=0.463
Domain overlap (PFAM):
C1:
PF103594=Fmp27_WPPW=FE(68.8=100)
A:
NO
C2:
PF103594=Fmp27_WPPW=PD(27.3=77.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCTCTTCTCCCAGCACGA
R:
ATCAGCATGATGTGTGGCGTT
Band lengths:
172-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]