GgaEX1053596 @ galGal4
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
Coordinates
chr4:49780445-49788894:+
Coord C1 exon
chr4:49780445-49780606
Coord A exon
chr4:49785353-49785449
Coord C2 exon
chr4:49788815-49788894
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTTACACGTTTCTTTCACAGTCT
3' ss Score
9.46
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ATCTTGGCACTTGTAGCAGTCAGAAAAGCCATGGACTACCTCTTCTCCCAGCATGACTTAAGTTTTCTTGATGACGTCATTCCAGAGAAGGACAAGAAAAAGAAAGAGGATGAGAAGAAGAAGAAAAAGAAGAAGGGCAGTCTGGACAGTGACAATGAGGAT
Seq A exon
TCTGACTGCCCCTACTCAGAAAAAGTCCCAAGTATTAAAATACCAATGGACATCATGGAGCAGGAACCTTTCCTAAGTGATAGCAAACCTGCCGACA
Seq C2 exon
AAGAAAAATCACCAACATTCCTTGAACGCCATACGTCGTGCTGATAAAATTCCTTTTCTTCAGTCACACACTATGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=0.273 C2=0.571
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATGGACTACCTCTTCTCC
R:
TGGCGTTCAAGGAATGTTGGT
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]