MmuEX0043410 @ mm9
Exon Skipping
Gene
ENSMUSG00000060961 | Slc4a4
Description
solute carrier family 4 (anion exchanger), member 4 [Source:MGI Symbol;Acc:MGI:1927555]
Coordinates
chr5:89657851-89663901:+
Coord C1 exon
chr5:89657851-89658012
Coord A exon
chr5:89661789-89661885
Coord C2 exon
chr5:89663822-89663901
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTGTACATTTTTTTCCACAGTCT
3' ss Score
9.64
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ATCCTGGCCCTGGTAGCAGTCAGAAAAGGTATGGATTACCTCTTCTCCCAGCACGACCTCAGCTTCCTTGATGATGTCATTCCAGAAAAGGACAAGAAAAAGAAGGAGGACGAGAAGAAAAAGAAAAAGAAGAAAGGAAGTTTGGATAGCGACAATGACGAT
Seq A exon
TCTGACTGCCCATACTCAGAAAAGGTCCCCAGTATTAAAATTCCAATGGACATCATGGAACAGCAACCTTTCCTAAGTGATAACAAACCCTTGGACA
Seq C2 exon
GAGAAAGATCCTCAACATTCCTCGAACGCCACACATCATGCTGATAAAATTCCTTTCCTTGAGTCGCTGGGTTTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060961_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=0.152 C2=0.352
Domain overlap (PFAM):
C1:
PF103594=Fmp27_WPPW=FE(68.8=100)
A:
NO
C2:
PF103594=Fmp27_WPPW=PD(27.3=77.8)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTCTTCTCCCAGCACGAC
R:
ATCAGCATGATGTGTGGCGTT
Band lengths:
171-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: