BtaEX0033355 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018227 | SLC4A7
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 7 (SLC4A7), mRNA. [Source:RefSeq mRNA;Acc:NM_001098926]
Coordinates
chr22:1805369-1809259:-
Coord C1 exon
chr22:1809144-1809259
Coord A exon
chr22:1807138-1807295
Coord C2 exon
chr22:1805369-1805456
Length
158 bp
Sequences
Splice sites
3' ss Seq
TATTATTTATTTGTCAATAGGTT
3' ss Score
8.54
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTATTTTGGCCTCTCCACAGTCTGCACCTGGAAACTTGGACAATAGTAAAAGTGGAGAAATGAAAGGTAATGGAAGTGGAGGAAGCAGAGAAAATAGTACTGTTGACTTCAGCAAG
Seq A exon
GTTGATATGAATTTCATGAGAAAAATTCCTTCAGGAGCTGAGGCGTCCAATGTTCTGGTGGGAGAGGTGGATTTTTTAGAAAGACCTATAATTGCGTTTGTGAGACTGGCTCCCGCTGTTCTTCTCTCAGGGCTAACTGAGGTCCCCGTCCCTACAAG
Seq C2 exon
GTTTTTGTTTCTGTTGCTGGGGCCTGCAGGCAAGGCACCACAGTATCACGAAATTGGAAGATCAATAGCCACCCTCATGACGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018227_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(14.2=100)
A:
PF075658=Band_3_cyto=FE(19.4=100)
C2:
PF075658=Band_3_cyto=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTTTGGCCTCTCCACAGTCT
R:
CATCCGTCATGAGGGTGGCTA
Band lengths:
202-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development