HsaEX0059844 @ hg19
Exon Skipping
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:11033]
Coordinates
chr3:27462191-27465643:-
Coord C1 exon
chr3:27465528-27465643
Coord A exon
chr3:27463113-27463270
Coord C2 exon
chr3:27462191-27462278
Length
158 bp
Sequences
Splice sites
3' ss Seq
AATTATTTATTTGTCAATAGGTT
3' ss Score
7.7
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTATTTTGGCCTCTCCCCAGTCTGCTCCTGGAAACTTGGACAATAGTAAAAGTGGAGAAATTAAAGGTAATGGAAGTGGTGGAAGCAGAGAAAATAGTACTGTTGACTTCAGCAAG
Seq A exon
GTTGATATGAATTTCATGAGAAAAATTCCTACGGGTGCTGAGGCATCCAACGTCCTGGTGGGCGAAGTAGACTTTTTGGAAAGGCCAATAATTGCATTTGTGAGACTGGCTCCTGCTGTCCTCCTTACAGGGTTGACTGAGGTCCCTGTTCCAACCAG
Seq C2 exon
GTTTTTGTTTTTGTTATTGGGTCCAGCGGGCAAGGCACCACAGTACCATGAAATTGGACGATCAATAGCCACTCTCATGACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.819 A=0.000 C2=0.004
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(15.2=75.0)
A:
PF075658=Band_3_cyto=FE(13.3=100)
C2:
PF075658=Band_3_cyto=FE(36.7=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATTTTGGCCTCTCCCCAGTCT
R:
TCATCTGTCATGAGAGTGGCT
Band lengths:
202-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)