GgaEX1053610 @ galGal4
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39043901-39047066:-
Coord C1 exon
chr2:39046951-39047066
Coord A exon
chr2:39045456-39045613
Coord C2 exon
chr2:39043901-39043988
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTTCATGTGACTAGGTT
3' ss Score
7.78
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GGCTGTTAGCATCTCCTCAGTCAGCACCTGGAAATTTGGACAATGGGAAGAGTGGAGATGTTAAAGGTACTGGGACAGGTGGAAGCAGAGAAAACAGCACTGTTGATTTTAGTAAG
Seq A exon
GTTGACATGAACTTCATGAGGAAAATTCCTTCCGGAGCAGAAGCATCAAATGTGTTAGTGGGAGAAGTAGATTTTTTAGAAAGACCTATTATTGCTTTTGTGAGGCTCTCTCCTGCTGTGCTTCTCTCAGGCCTCACAGAGGTTCCGGTACCTACACG
Seq C2 exon
GTTTCTGTTTTTATTGCTGGGACCAGCAGGAAAAGCTCCGCAGTATCATGAAATTGGAAGATCAATAGCAACACTTATGACAGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.785 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(14.2=100)
A:
PF075658=Band_3_cyto=FE(19.4=100)
C2:
PF075658=Band_3_cyto=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTAGCATCTCCTCAGTCA
R:
TCATCTGTCATAAGTGTTGCTATTGA
Band lengths:
202-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]