MmuEX0043421 @ mm9
Exon Skipping
Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:15578482-15583036:+
Coord C1 exon
chr14:15578482-15578597
Coord A exon
chr14:15580980-15581137
Coord C2 exon
chr14:15582949-15583036
Length
158 bp
Sequences
Splice sites
3' ss Seq
CATTACTTATTTACCAATAGGTT
3' ss Score
8.17
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
GGATTTTGGCTTCTCCACAGTCTGCTCCTGGAAACTTGGACAATAGTAAAAGTGGTGAAATGAAAGGTAACGGAAGTGGAGGAAGCAGAGAAAATAGTACTGTTGACTTTAGCAAG
Seq A exon
GTTGACATGAATTTCATGAGGAAAATTCCTACAGGAGCTGAGGCATCCAATGTTTTGGTAGGAGAAGTGGACTTCTTGGAGAGACCGATCATTGCATTTGTGAGACTGGCTCCTGCAGTTCTCCTCTCAGGGTTGACTGAGGTCCCTGTGCCCACTAG
Seq C2 exon
GTTTTTGTTTCTGTTACTGGGCCCAGCAGGGAAAGCCCCACAGTACCATGAAATTGGCAGATCCATAGCAACTCTCATGACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733-'13-14,'13-12,15-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(14.2=100)
A:
PF075658=Band_3_cyto=FE(19.4=100)
C2:
PF075658=Band_3_cyto=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTTTGGCTTCTCCACAGTCT
R:
CATCTGTCATGAGAGTTGCTATGGA
Band lengths:
202-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: