RnoEX6051277 @ rn6
Exon Skipping
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11870891-11874677:-
Coord C1 exon
chr15:11874562-11874677
Coord A exon
chr15:11872359-11872516
Coord C2 exon
chr15:11870891-11870978
Length
158 bp
Sequences
Splice sites
3' ss Seq
TACAAATTATTTATCAATAGGTT
3' ss Score
7.4
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
GGATTTTGGCTTCTCCACAGTCTGCTCCTGGAAACCTGGACAGTAGTAAAAGTGGTGAAGTGAAAGGTAACGGAAGTGGAGGAAGCAGAGAAAATAGTACTGTTGACTTTAGCAAG
Seq A exon
GTTGACATGAATTTCATGAGGAAAATTCCTACAGGAGCTGAGGCATCCAATGTTTTGGTAGGAGAGGTGGATTTCTTGGAGAGACCTATCATTGCATTTGTGAGACTGGCTCCTGCAGTTCTCCTCTCAGGGTTGACTGAGGTCCCTGTGCCCACTAG
Seq C2 exon
GTTTTTGTTTCTGTTACTGGGCCCAGCAGGAAAGGCTCCACAGTACCATGAAATTGGCAGATCCATAGCAACTCTAATGACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957-'14-14,'14-12,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=0.003 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(14.2=100)
A:
PF075658=Band_3_cyto=FE(13.3=100)
C2:
PF075658=Band_3_cyto=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTTTGGCTTCTCCACAGTCT
R:
TCATCTGTCATTAGAGTTGCTATGGA
Band lengths:
203-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]