DreEX6042454 @ danRer10
Exon Skipping
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42816561-42821949:-
Coord C1 exon
chr16:42821834-42821949
Coord A exon
chr16:42816777-42816934
Coord C2 exon
chr16:42816561-42816648
Length
158 bp
Sequences
Splice sites
3' ss Seq
CGCTAATCTGTGCTCTATAGGTG
3' ss Score
7.44
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTCTTCTTGCGTCGCCCCAGTCGGCCCCGGGCATCCTGGAGAACAGTAAGTCCAGTGAAAGCCGAATAAATGGCACCGGTGGCAGCAGGGAAAATAGCACAGTGGACTTCAGCAGA
Seq A exon
GTGGACATGAATTTTATGAAGAAAATCCCGCCTGGGGCTGAAGCTTCAAATGTTTTGGTGGGGGAGGTTGATTTCCTTGAGCGTCCAATCATTGCCTTTATCCGACTCTCGCCTGCTGTTCTTCTCACCGGACTGACCGAAGTGCCCGTTCCGACAAG
Seq C2 exon
GTTTCTCTTCCTGCTGTTAGGGCCTTTCGGTAAAGGAGCCCAGTACCATGAGATTGGCAGATCTATAGCTACGTTGATGACAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952-'12-12,'12-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.754 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(14.2=100)
A:
PF075658=Band_3_cyto=FE(19.8=100)
C2:
PF075658=Band_3_cyto=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCTTGCGTCGCCCC
R:
CTCATCTGTCATCAACGTAGCT
Band lengths:
204-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]