BtaEX0033368 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021775 | SLC4A9
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 9 (SLC4A9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192206]
Coordinates
chr7:53247096-53250498:+
Coord C1 exon
chr7:53247096-53247358
Coord A exon
chr7:53249032-53249145
Coord C2 exon
chr7:53250337-53250498
Length
114 bp
Sequences
Splice sites
3' ss Seq
AGTGTCCGCTGGGTGGCCAGGTA
3' ss Score
3.93
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGATCACAGCCTGGATTACCTGCCCTTCCGCCTGTGGGTTGGCATCTGGGTGGCCATCTTTTGCCTGGTGCTGGTGGCCACGGAGGCCAGCGTGCTGGTGCGCTACTTTACCCGCTTCACCGAGGAAGGCTTCTGTGCTCTCATCAGTCTCATCTTCATCTATGATGCTGTTGCAAAAATGCTGACCTTGACCCATGCCTATCCCATCCAGAGACCTGGCTCTCCCACCTATGGCTGTCTCTGCCAGTACCCAGATCCAGGAG
Seq A exon
GTACGCAAGATGCTGGGTGACTTCTCCTCGGTCCTGGCCATCCTGCTAGGCTGTGGCCTCGATGCCTTCCTTGGCCTAGCCACACCGAAGCTCATGGTGCCCAGAGAGTTCAAG
Seq C2 exon
CCCACACTCCCTGGACGTGGCTGGCTGGTGTCACCTTTTGGAGCCAACCCCTGGTGGCTGAGTGTGGCAGCTGCCCTGCCTGCTCTGGTATTGTCTATCCTCATTTTCATGGACCAGCAGATCACAGGGGTCATCCTCAACCGTGCTGAATACAGACTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021775_MULTIEX1-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(17.1=100)
A:
PF0095516=HCO3_cotransp=FE(7.2=100)
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTTTGCCTGGTGCTGGTG
R:
TTGGCTCCAAAAGGTGACACC
Band lengths:
255-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development